不同灌溉量夏玉米叶绿素含量的高光谱特征及其反演

植物叶绿素含量直接影响其光合作用，并与植物的光谱特征密切相关。以夏玉米为研究对象，采用人工控水方法研究了夏玉米七叶期不同灌溉量下冠层叶绿素含量特征及其与光谱特征之间的关系。结果表明：灌溉量越少，夏玉米叶片叶绿素含量越低，冠层光谱反射率越高，绿峰位置"红移"，而红边位置"蓝移"。叶绿素含量与光谱特征参数、植被光谱指数之间存在极显著相关关系，据此建立了冠层叶绿素含量高光谱估算模型，且基于植被指数模型较基于单一光谱特征参数模型模拟效果更好。研究结果可为夏玉米叶绿素含量的快速无损测定以及夏玉米干旱监测提供依据。     

Behavioral signatures of structured feature detection during courtship in Drosophila

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Determinants of resistant starch accumulation in wheat endosperm

A part of the big three cereal crops in the world, wheat has become a major constituent of the everyday food chain and is grown at a massive scale to meet global demands. This makes it an important crop from an economic as well as food security perspective. Selection of high-quality cultivars and consistent trait enhancement for such cultivars is crucial, and in light of new challenges from climate change, this has become an absolute necessity of time. In this regard, we conducted a detailed qualitative and quantitative trait analysis for multiple commercially viable varieties of wheat, and corresponding results were subjected to a series of critical statistical analyses. Final results have shown that five cultivars including Uqaab-2000, Faisalabad- 85, Anmol-19, NARC-2009, and Pirsabak-2004 depicts higher levels of various essential qualitative and quantitative traits (including Starch content, grain weight, RS content, Protein content, etc.) and are most viable varieties for further growth and trait enhancements to meet regional and global food challenges.     

利用Ecopath模型评价鲢鳙放养对千岛湖生态系统的影响

“保水渔业”是中国控制"水华"暴发等生态灾变的措施之一，其结果存在较大的不确定性。在浙江省的新安江水库（千岛湖），"保水渔业"的实施带来了水质改善和渔业增产的双重效果。但在生态系统自组织层面，这种人工干预手段引起的生态系统结构化效应的研究，尚未真正展开。基于2008-2010年千岛湖的生态和渔业资源调查数据，应用EwE （V6.6）构建了2010年千岛湖生态系统的Ecopath模型，并将其与2004和2016年的模型进行对照，分析了千岛湖生态系统在鲢、鳙鱼放养下的变化。千岛湖生态系统在3个年份均为4个整合营养级，营养能流分布成典型的金字塔型，且营养流总量中流向碎屑的占比很大，营养级Ⅰ、Ⅱ的能量被利用得不够充分；除鲢、鳙鱼外大部分鱼类的生物量逐渐下降，浮游植物和碎屑的生物量增多；系统的初级生产力和规模得到了一定提升，但总体的能量转换效率有所降低。在一些和系统成熟度、复原力和稳定性密切相关的参数方面，总初级生产量/总呼吸量增加，Finn氏循环指数和Finn氏平均路径长度逐渐降低，3个年份的连接指数（CI）分别为0.223、0.219、0.263，系统杂食指数（SOI）分别为0.087、0.102和0.131。研究分析表明，长期的鲢、鳙鱼放养使千岛湖的食物网结构发生了较大的变动，生态系统的营养交互关系不够复杂，成熟度和稳定性有所下降。千岛湖作为一个由水库发展而来的淡水水体，食物网关系本身就较为简单。因此，未来需要避免过多的人为干扰，并基于生态学原理更系统地进行修复工作。     

The etymology of microbial nomenclature and the diseases these cause in a historical perspective

When the hunter-gatherers finally started settling down as farmers, infectious diseases started scourging them. The earlier humans could differentiate sporadic diseases like tooth decay, tumors, etc., from the infectious diseases that used to cause outbreaks and epidemics. The earliest comprehension of infectious diseases was primarily based on religious background and myths, but as human knowledge grew, the causes of these diseases were being probed. Similarly, the taxonomy of infectious diseases gradually changed from superstitious prospects, like influenza, signifying disease infliction due to the “influence of stars” to more scientific ones like tuberculosis derived from the word “tuberculum” meaning small swellings seen in postmortem human tissue specimens. From a historical perspective, we identified five categories for the basis of the microbial nomenclature, namely phenotypic characteristics of microbe, disease name, eponym, body site of isolation, and toponym. This review article explores the etymology of common infectious diseases and microorganisms’ nomenclature in a historical context.     

Modulation of defense-response gene expression in wheat during Hessian fly larval feeding

Abstract

Expression profiles of ten genes commonly up-regulated during plant defense against microbial pathogens were compared temporally during compatible and incompatible interactions with first-instar Hessian fly larvae, in two wheat lines carrying different resistance genes. Quantitative real-time PCR revealed that while a lipoxygenase gene (WCI-2) was strongly up-regulated during the incompatible interactions, genes encoding β-1,3 endoglucanase (GNS) and an integral membrane protein (WIR1) were moderately responsive. Genes for thionin-like protein (WCI-3), PR-17-like protein (WCI-5), MAP kinase (WCK-1), phenylalanine ammonia-lyase (PAL), pathogenesis-related protein-1 (PR-1), receptor-like kinase (LRK10) and heat shock protein 70 (HSP70) were minimally responsive. The application of signaling molecules, salicylic acid (SA), methyl jasmonate (MJ) and abscisic acid (ABA), to insect-free plants demonstrated association of these genes with specific defense-response pathways. SA-induced up-regulation of a gene related to lipoxygenases that are involved in jasmonic acid (JA)-biosynthesis is suggestive of positive cross-talk between SA- and JA-mediated signaling pathways. Data suggest that alternative mechanisms may be involved since few of these classical defense-response genes are significantly up-regulated during incompatible interactions between wheat and Hessian fly.     

Quantitative Metaproteomics and Activity-based Protein Profiling of Patient Fecal Microbiome Identifies Host and Microbial Serine-type Endopeptidase Activity Associated With Ulcerative Colitis

The gut microbiota plays an important yet incompletely understood role in the induction and propagation of ulcerative colitis (UC). Organism-level efforts to identify UC-associated microbes have revealed the importance of community structure, but less is known about the molecular effectors of disease. We performed 16S rRNA gene sequencing in parallel with label-free data-dependent LC-MS/MS proteomics to characterize the stool microbiomes of healthy (n = 8) and UC (n = 10) patients. Comparisons of taxonomic composition between techniques revealed major differences in community structure partially attributable to the additional detection of host, fungal, viral, and food peptides by metaproteomics. Differential expression analysis of metaproteomic data identified 176 significantly enriched protein groups between healthy and UC patients. Gene ontology analysis revealed several enriched functions with serine-type endopeptidase activity overrepresented in UC patients. Using a biotinylated fluorophosphonate probe and streptavidin-based enrichment, we show that serine endopeptidases are active in patient fecal samples and that additional putative serine hydrolases are detectable by this approach compared with unenriched profiling. Finally, as metaproteomic databases expand, they are expected to asymptotically approach completeness. Using ComPIL and de novo peptide sequencing, we estimate the size of the probable peptide space unidentified (“dark peptidome”) by our large database approach to establish a rough benchmark for database sufficiency. Despite high variability inherent in patient samples, our analysis yielded a catalog of differentially enriched proteins between healthy and UC fecal proteomes. This catalog provides a clinically relevant jumping-off point for further molecular-level studies aimed at identifying the microbial underpinnings of UC.     

Quantitative Proteomic Analysis Reveals Important Roles of the Acetylation of ER-Resident Molecular Chaperones for Conidiation in Fusarium oxysporum

Fusarium oxysporum is one of the most abundant and diverse fungal species found in soils and includes nonpathogenic, endophytic, and pathogenic strains affecting a broad range of plant and animal hosts. Conidiation is the major mode of reproduction in many filamentous fungi, but the regulation of this process is largely unknown. Lysine acetylation (Kac) is an evolutionarily conserved and widespread posttranslational modification implicated in regulation of multiple metabolic processes. A total of 62 upregulated and 49 downregulated Kac proteins were identified in sporulating mycelia versus nonsporulating mycelia of F. oxysporum. Diverse cellular proteins, including glycolytic enzymes, ribosomal proteins, and endoplasmic reticulum–resident molecular chaperones, were differentially acetylated in the sporulation process. Altered Kac levels of three endoplasmic reticulum–resident molecular chaperones, PDI^K70, HSP70^K604, and HSP40^K32 were identified that with important roles in F. oxysporum conidiation. Specifically, K70 acetylation (K70ac) was found to be crucial for maintaining stability and activity of protein disulphide isomerase and the K604ac of HSP70 and K32ac of HSP40 suppressed the detoxification ability of these heat shock proteins, resulting in higher levels of protein aggregation. During conidial formation, an increased level of PDI^K70ac and decreased levels of HSP70^K604ac and HSP40^K32ac contributed to the proper processing of unfolded proteins and eliminated protein aggregation, which is beneficial for dramatic cell biological remodeling during conidiation in F. oxysporum.